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DeepHealth/MODEL_ARCHITECTURES.md

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# Model architectures
DeepHealth uses one codebase for both supported history-block architectures.
Select the architecture explicitly when starting a training run:
| `model_architecture` | History block | Checkpoint fingerprint |
| --- | --- | --- |
| `transformer_ffn_v1` | Temporal attention + SwiGLU FFN | `blocks.*.mlp.w1/w2/w3` and `blocks.*.ln2` |
| `traj_mixer_v5` | Temporal attention + TrajMixer | `blocks.*.mlp.intra_*`, `gate_proj`, and `output_proj` |
`transformer_ffn_v1` is the CLI default; pass `traj_mixer_v5` explicitly for
TrajMixer runs.
## Training
Next-step example:
```powershell
python train_next_step.py --model_architecture traj_mixer_v5 --n_layer 12
```
All-future example:
```powershell
python train_all_future.py --model_architecture transformer_ffn_v1 --n_layer 12
```
New runs are separated by architecture:
```text
runs/
transformer_ffn_v1/
<run_name>/
traj_mixer_v5/
<run_name>/
```
Use `--runs_root` to place this structure under a different root. Existing run
directories are not moved or renamed.
Each generated `train_config.json` records `model_architecture`, total parameter
count, and trainable parameter count.
Both training entry points use the single `--n_layer` option to set the number
of history backbone blocks. The same value is passed to `DeepHealth.n_layer`
and saved as `n_layer` in `train_config.json`; it must be at least 1.
## Architecture validation
Evaluation resolves the architecture before constructing the model and always
loads weights with `strict=True`.
- Every config must include an explicit `model_architecture` marker.
- Checkpoint fingerprints are used to validate that the selected architecture
matches the stored weights.
- A config marker that conflicts with the checkpoint fingerprint raises an
error instead of silently choosing one architecture.
- Unsupported historical TrajMixer markers such as `traj_mixer_v2`,
`traj_mixer_v3`, and `traj_mixer_v4` are rejected.
- Checkpoints and configs created before architecture markers were introduced
are intentionally unsupported.
Project code should use the architecture factory rather than instantiate a
history block directly.