Add distributed end-to-end training
This commit is contained in:
@@ -83,6 +83,14 @@ torchrun --standalone --nproc_per_node=4 train_exposure_autoencoder.py \
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In DDP mode, `--batch_size` is the global batch size and must be divisible by
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In DDP mode, `--batch_size` is the global batch size and must be divisible by
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the number of processes.
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the number of processes.
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The end-to-end next-step trainer supports the same DDP launch pattern:
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```bash
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torchrun --standalone --nproc_per_node=4 train_next_step.py \
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--exposure_cache_dir ukb_exposure_cache \
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--batch_size 128
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```
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Training-channel statistics are cached at
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Training-channel statistics are cached at
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`<exposure_cache_dir>/train_channel_stats.npz`; use
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`<exposure_cache_dir>/train_channel_stats.npz`; use
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`--recompute_channel_stats` only when a forced refresh is needed.
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`--recompute_channel_stats` only when a forced refresh is needed.
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@@ -11,19 +11,29 @@ import argparse
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import json
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import json
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import logging
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import logging
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import math
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import math
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import os
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import time
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import time
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from pathlib import Path
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from typing import Any, Dict, Iterator, List
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from typing import Any, Dict, Iterator, List
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import numpy as np
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import numpy as np
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import torch
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import torch
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import torch.distributed as dist
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import torch.nn as nn
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from torch.nn.parallel import DistributedDataParallel
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from torch.nn.utils import clip_grad_norm_
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from torch.nn.utils import clip_grad_norm_
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from torch.optim import AdamW
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from torch.optim import AdamW
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from torch.utils.data import DataLoader, RandomSampler, Sampler
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from torch.utils.data import (
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DataLoader,
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DistributedSampler,
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RandomSampler,
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Sampler,
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)
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from tqdm.auto import tqdm
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from tqdm.auto import tqdm
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from dataset import HealthDataset, collate_fn
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from dataset import HealthDataset, collate_fn
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from losses import build_loss
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from losses import build_loss
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from models import DeepHealth, DeepHealthOutput
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from models import DeepHealth
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from readouts import build_readout
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from readouts import build_readout
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from targets import CHECKUP_IDX, NO_EVENT_IDX, PAD_IDX
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from targets import CHECKUP_IDX, NO_EVENT_IDX, PAD_IDX
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from train_util import (
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from train_util import (
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@@ -106,6 +116,92 @@ class ExposureLocalityBatchSampler(Sampler[List[int]]):
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return (block_id, block_offset, raw_idx)
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return (block_id, block_offset, raw_idx)
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class DistributedExposureLocalityBatchSampler(Sampler[List[int]]):
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"""Shard samples across ranks, then batch each shard by exposure locality."""
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def __init__(
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self,
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data_source,
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batch_size: int,
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buffer_size: int,
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seed: int,
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rank: int,
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world_size: int,
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) -> None:
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self.data_source = data_source
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self.batch_size = int(batch_size)
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self.buffer_size = max(int(buffer_size), self.batch_size)
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self.distributed_sampler = DistributedSampler(
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data_source,
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num_replicas=world_size,
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rank=rank,
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shuffle=True,
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seed=seed,
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drop_last=False,
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)
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self._key_sampler = ExposureLocalityBatchSampler(
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data_source, batch_size, buffer_size, seed
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)
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def set_epoch(self, epoch: int) -> None:
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self.distributed_sampler.set_epoch(epoch)
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def __iter__(self) -> Iterator[List[int]]:
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indices = list(self.distributed_sampler)
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for start in range(0, len(indices), self.buffer_size):
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buffer = indices[start:start + self.buffer_size]
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buffer.sort(key=self._key_sampler._locality_key)
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for batch_start in range(0, len(buffer), self.batch_size):
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yield buffer[batch_start:batch_start + self.batch_size]
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def __len__(self) -> int:
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return math.ceil(len(self.distributed_sampler) / self.batch_size)
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class NextStepTrainingModel(nn.Module):
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"""Keep backbone, readout, and risk head inside the DDP forward boundary."""
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def __init__(self, model: DeepHealth, readout: nn.Module, readout_name: str):
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super().__init__()
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self.model = model
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self.readout = readout
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self.readout_name = readout_name
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def forward(
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self,
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event_seq: torch.Tensor,
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time_seq: torch.Tensor,
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sex: torch.Tensor,
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padding_mask: torch.Tensor,
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readout_mask: torch.Tensor | None = None,
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exposure_daily: torch.Tensor | None = None,
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exposure_monthly: torch.Tensor | None = None,
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) -> tuple[torch.Tensor, torch.Tensor, torch.Tensor]:
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hidden = self.model(
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event_seq=event_seq,
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time_seq=time_seq,
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sex=sex,
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padding_mask=padding_mask,
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target_mode="next_token",
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exposure_daily=exposure_daily,
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exposure_monthly=exposure_monthly,
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)
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if not isinstance(hidden, torch.Tensor):
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raise TypeError("DeepHealth forward must return a hidden-state tensor")
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current_times = time_seq[:, :hidden.size(1)]
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current_padding = padding_mask[:, :hidden.size(1)]
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readout_out = self.readout(
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hidden=hidden,
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time_seq=current_times,
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padding_mask=current_padding,
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readout_mask=readout_mask
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if self.readout_name == "same_time_group_end"
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else None,
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)
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logits = self.model.calc_risk(readout_out.hidden)
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return logits, current_times, readout_out.readout_mask
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def parse_args() -> argparse.Namespace:
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def parse_args() -> argparse.Namespace:
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parser = argparse.ArgumentParser(
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parser = argparse.ArgumentParser(
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description="Train DeepHealth with next-token/point supervision")
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description="Train DeepHealth with next-token/point supervision")
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@@ -174,6 +270,12 @@ def parse_args() -> argparse.Namespace:
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),
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),
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)
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)
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parser.add_argument("--device", type=str, default="cuda")
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parser.add_argument("--device", type=str, default="cuda")
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parser.add_argument(
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"--amp",
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action=argparse.BooleanOptionalAction,
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default=True,
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help="Use CUDA automatic mixed precision.",
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)
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parser.add_argument(
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parser.add_argument(
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"--data_parallel",
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"--data_parallel",
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action="store_true",
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action="store_true",
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@@ -185,6 +287,12 @@ def parse_args() -> argparse.Namespace:
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default=None,
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default=None,
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help="Comma-separated CUDA device ids for --data_parallel, e.g. 0,1,2,3.",
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help="Comma-separated CUDA device ids for --data_parallel, e.g. 0,1,2,3.",
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)
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)
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parser.add_argument(
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"--ddp_backend",
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default=None,
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choices=["nccl", "gloo"],
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help="DDP backend. Defaults to nccl for torchrun multi-GPU training.",
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)
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parser.add_argument("--progress_interval", type=int, default=20)
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parser.add_argument("--progress_interval", type=int, default=20)
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args = parser.parse_args()
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args = parser.parse_args()
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@@ -242,7 +350,9 @@ def _cuda_device_index(device: torch.device) -> int:
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def unwrap_model(model):
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def unwrap_model(model):
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return model.module if isinstance(model, torch.nn.DataParallel) else model
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if isinstance(model, (torch.nn.DataParallel, DistributedDataParallel)):
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return model.module
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return model
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def maybe_wrap_data_parallel(
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def maybe_wrap_data_parallel(
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@@ -259,7 +369,6 @@ def maybe_wrap_data_parallel(
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raise ValueError("--data_parallel requires at least two CUDA devices")
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raise ValueError("--data_parallel requires at least two CUDA devices")
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primary = _cuda_device_index(device)
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primary = _cuda_device_index(device)
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device_ids = args.gpu_ids if args.gpu_ids else list(range(torch.cuda.device_count()))
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device_ids = args.gpu_ids if args.gpu_ids else list(range(torch.cuda.device_count()))
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if primary not in device_ids:
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device_ids = [primary, *[idx for idx in device_ids if idx != primary]]
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device_ids = [primary, *[idx for idx in device_ids if idx != primary]]
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if len(device_ids) < 2:
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if len(device_ids) < 2:
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raise ValueError("--data_parallel needs at least two device ids")
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raise ValueError("--data_parallel needs at least two device ids")
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@@ -267,6 +376,54 @@ def maybe_wrap_data_parallel(
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return torch.nn.DataParallel(model, device_ids=device_ids, output_device=primary)
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return torch.nn.DataParallel(model, device_ids=device_ids, output_device=primary)
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def init_distributed(
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args: argparse.Namespace,
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) -> tuple[torch.device, int, int, int]:
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world_size = int(os.environ.get("WORLD_SIZE", "1"))
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if world_size == 1:
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return resolve_device(args.device), 0, 0, 1
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if args.data_parallel:
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raise ValueError("--data_parallel cannot be combined with torchrun/DDP")
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if not torch.cuda.is_available():
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raise ValueError("Multi-process next-step training requires CUDA")
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rank = int(os.environ["RANK"])
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local_rank = int(os.environ["LOCAL_RANK"])
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torch.cuda.set_device(local_rank)
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dist.init_process_group(
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backend=args.ddp_backend or "nccl",
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init_method="env://",
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)
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return torch.device("cuda", local_rank), rank, local_rank, world_size
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def distributed_run_dir(
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args: argparse.Namespace, rank: int, world_size: int
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) -> tuple[Path, str]:
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payload: list[str | None] = [None, None]
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if rank == 0:
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run_dir, run_name = create_unique_run_dir(
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lambda timestamp: (
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f"absolute_exponential_next_token_{args.target_mode}_"
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f"gap_{args.no_event_interval_years:g}y_"
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f"{'exposure' if args.exposure_cache_dir else 'noexposure'}_"
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f"{timestamp}"
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)
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)
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payload = [str(run_dir), run_name]
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if world_size > 1:
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dist.broadcast_object_list(payload, src=0)
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return Path(str(payload[0])), str(payload[1])
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def rank_logger(rank: int, run_dir: Path) -> logging.Logger:
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if rank == 0:
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return setup_logging(run_dir)
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logger = logging.getLogger(f"DeepHealth.rank{rank}")
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logger.handlers.clear()
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logger.addHandler(logging.NullHandler())
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return logger
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def build_model(args: argparse.Namespace, dataset: HealthDataset) -> DeepHealth:
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def build_model(args: argparse.Namespace, dataset: HealthDataset) -> DeepHealth:
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return DeepHealth(
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return DeepHealth(
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vocab_size=dataset.vocab_size,
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vocab_size=dataset.vocab_size,
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@@ -314,38 +471,15 @@ def build_next_step_loss(args: argparse.Namespace):
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)
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)
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def build_augmented_next_step_targets(
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batch_cpu: Dict[str, torch.Tensor],
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model_out: DeepHealthOutput,
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include_uts_targets: bool,
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) -> Dict[str, torch.Tensor]:
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device = model_out.hidden.device
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non_blocking = device.type == "cuda"
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targets = {
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"target_event_seq": batch_cpu["target_event_seq"].to(device, non_blocking=non_blocking),
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"target_time_seq": batch_cpu["target_time_seq"].to(device, non_blocking=non_blocking),
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"readout_mask": batch_cpu["readout_mask"].to(device, non_blocking=non_blocking),
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}
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if include_uts_targets:
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targets["target_dt_unique"] = batch_cpu["target_dt_unique"].to(
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device, non_blocking=non_blocking
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)
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targets["target_multi_hot"] = batch_cpu["target_multi_hot"].to(
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device, non_blocking=non_blocking
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)
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return targets
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def compute_next_step_loss(
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def compute_next_step_loss(
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args: argparse.Namespace,
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args: argparse.Namespace,
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model: DeepHealth,
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model,
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readout,
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criterion,
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criterion,
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batch: Dict[str, torch.Tensor],
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batch: Dict[str, torch.Tensor],
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device: torch.device,
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device: torch.device,
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) -> tuple[torch.Tensor, Dict[str, torch.Tensor]]:
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) -> tuple[torch.Tensor, Dict[str, torch.Tensor]]:
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batch_cpu = batch
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batch_cpu = batch
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input_keys = list(MODEL_INPUT_KEYS)
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input_keys = [*MODEL_INPUT_KEYS, "readout_mask"]
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input_keys.extend(key for key in EXPOSURE_INPUT_KEYS if key in batch_cpu)
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input_keys.extend(key for key in EXPOSURE_INPUT_KEYS if key in batch_cpu)
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batch = move_batch_to_device(
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batch = move_batch_to_device(
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{key: batch_cpu[key] for key in input_keys},
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{key: batch_cpu[key] for key in input_keys},
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@@ -356,42 +490,36 @@ def compute_next_step_loss(
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"time_seq": batch["time_seq"],
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"time_seq": batch["time_seq"],
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"sex": batch["sex"],
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"sex": batch["sex"],
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"padding_mask": batch["padding_mask"],
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"padding_mask": batch["padding_mask"],
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"target_mode": "next_token",
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"readout_mask": batch["readout_mask"],
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}
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}
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if "exposure_daily" in batch:
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if "exposure_daily" in batch:
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model_kwargs["exposure_daily"] = batch["exposure_daily"]
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model_kwargs["exposure_daily"] = batch["exposure_daily"]
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model_kwargs["exposure_monthly"] = batch["exposure_monthly"]
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model_kwargs["exposure_monthly"] = batch["exposure_monthly"]
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hidden = model(**model_kwargs)
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logits, current_times, output_readout_mask = model(**model_kwargs)
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if not isinstance(hidden, torch.Tensor):
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non_blocking = device.type == "cuda"
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raise TypeError("DeepHealth forward must return a hidden-state tensor")
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targets = {
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model_out = DeepHealthOutput(
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"target_event_seq": batch_cpu["target_event_seq"].to(
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hidden=hidden,
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device, non_blocking=non_blocking
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time_seq=batch["time_seq"][:, : hidden.size(1)],
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),
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padding_mask=batch["padding_mask"][:, : hidden.size(1)],
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"target_time_seq": batch_cpu["target_time_seq"].to(
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event_len=int(hidden.size(1)),
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device, non_blocking=non_blocking
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),
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}
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if args.target_mode == "uts":
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targets["target_dt_unique"] = batch_cpu["target_dt_unique"].to(
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device, non_blocking=non_blocking
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)
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)
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targets = build_augmented_next_step_targets(
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targets["target_multi_hot"] = batch_cpu["target_multi_hot"].to(
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batch_cpu=batch_cpu,
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device, non_blocking=non_blocking
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model_out=model_out,
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include_uts_targets=args.target_mode == "uts",
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)
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)
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readout_out = readout(
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hidden=model_out.hidden,
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time_seq=model_out.time_seq,
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padding_mask=model_out.padding_mask,
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readout_mask=targets["readout_mask"]
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if args.readout_name == "same_time_group_end"
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else None,
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)
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logits = unwrap_model(model).calc_risk(readout_out.hidden)
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if args.target_mode == "delphi2m":
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if args.target_mode == "delphi2m":
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loss, parts = criterion(
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loss, parts = criterion(
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logits=logits,
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logits=logits,
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target_events=targets["target_event_seq"],
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target_events=targets["target_event_seq"],
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target_times=targets["target_time_seq"],
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target_times=targets["target_time_seq"],
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current_times=model_out.time_seq,
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current_times=current_times,
|
||||||
padding_mask=readout_out.readout_mask,
|
padding_mask=output_readout_mask,
|
||||||
return_components=True,
|
return_components=True,
|
||||||
)
|
)
|
||||||
else:
|
else:
|
||||||
@@ -399,70 +527,82 @@ def compute_next_step_loss(
|
|||||||
logits=logits,
|
logits=logits,
|
||||||
target_multi_hot=targets["target_multi_hot"],
|
target_multi_hot=targets["target_multi_hot"],
|
||||||
target_dt_unique=targets["target_dt_unique"],
|
target_dt_unique=targets["target_dt_unique"],
|
||||||
readout_mask=readout_out.readout_mask,
|
readout_mask=output_readout_mask,
|
||||||
return_components=True,
|
return_components=True,
|
||||||
)
|
)
|
||||||
if not torch.isfinite(loss):
|
|
||||||
raise RuntimeError(f"Loss is not finite: {float(loss.detach().cpu())}")
|
|
||||||
return loss, parts
|
return loss, parts
|
||||||
|
|
||||||
|
|
||||||
def run_epoch(
|
def run_epoch(
|
||||||
logger: logging.Logger,
|
logger: logging.Logger,
|
||||||
args: argparse.Namespace,
|
args: argparse.Namespace,
|
||||||
model: DeepHealth,
|
model,
|
||||||
readout,
|
|
||||||
criterion,
|
criterion,
|
||||||
loader: DataLoader,
|
loader: DataLoader,
|
||||||
optimizer: AdamW | None,
|
optimizer: AdamW | None,
|
||||||
device: torch.device,
|
device: torch.device,
|
||||||
is_train: bool,
|
is_train: bool,
|
||||||
|
rank: int,
|
||||||
|
scaler: torch.amp.GradScaler,
|
||||||
|
amp_enabled: bool,
|
||||||
) -> float:
|
) -> float:
|
||||||
model.train(is_train)
|
model.train(is_train)
|
||||||
readout.train(is_train)
|
totals = torch.zeros(3, device=device, dtype=torch.float64)
|
||||||
total = torch.zeros((), device=device)
|
|
||||||
n_batches = 0
|
|
||||||
skipped = 0
|
|
||||||
parts_sum: Dict[str, torch.Tensor] = {}
|
parts_sum: Dict[str, torch.Tensor] = {}
|
||||||
desc = "train" if is_train else "val"
|
desc = "train" if is_train else "val"
|
||||||
progress_interval = max(1, int(args.progress_interval))
|
progress_interval = max(1, int(args.progress_interval))
|
||||||
|
|
||||||
progress = tqdm(loader, desc=desc, leave=False, dynamic_ncols=True)
|
progress = tqdm(
|
||||||
|
loader, desc=desc, leave=False, dynamic_ncols=True, disable=rank != 0
|
||||||
|
)
|
||||||
for batch_idx, batch in enumerate(progress):
|
for batch_idx, batch in enumerate(progress):
|
||||||
try:
|
with torch.autocast(
|
||||||
loss, parts = compute_next_step_loss(args, model, readout, criterion, batch, device)
|
device_type=device.type,
|
||||||
|
dtype=torch.float16,
|
||||||
|
enabled=amp_enabled,
|
||||||
|
):
|
||||||
|
loss, parts = compute_next_step_loss(
|
||||||
|
args, model, criterion, batch, device
|
||||||
|
)
|
||||||
|
finite = torch.isfinite(loss).to(dtype=torch.int32)
|
||||||
|
if dist.is_initialized():
|
||||||
|
dist.all_reduce(finite, op=dist.ReduceOp.MIN)
|
||||||
|
if not bool(finite.item()):
|
||||||
|
totals[2] += 1
|
||||||
|
continue
|
||||||
if is_train:
|
if is_train:
|
||||||
if optimizer is None:
|
if optimizer is None:
|
||||||
raise ValueError("optimizer is required for training")
|
raise ValueError("optimizer is required for training")
|
||||||
optimizer.zero_grad(set_to_none=True)
|
optimizer.zero_grad(set_to_none=True)
|
||||||
loss.backward()
|
scaler.scale(loss).backward()
|
||||||
|
scaler.unscale_(optimizer)
|
||||||
if args.grad_clip > 0:
|
if args.grad_clip > 0:
|
||||||
clip_grad_norm_(model.parameters(), args.grad_clip)
|
clip_grad_norm_(model.parameters(), args.grad_clip)
|
||||||
optimizer.step()
|
scaler.step(optimizer)
|
||||||
|
scaler.update()
|
||||||
|
|
||||||
total = total + loss.detach()
|
totals[0] += loss.detach().double()
|
||||||
n_batches += 1
|
totals[1] += 1
|
||||||
for name, value in parts.items():
|
for name, value in parts.items():
|
||||||
parts_sum[name] = parts_sum.get(name, torch.zeros((), device=device)) + value.detach()
|
parts_sum[name] = (
|
||||||
if (batch_idx + 1) % progress_interval == 0:
|
parts_sum.get(name, torch.zeros((), device=device))
|
||||||
avg = total / max(1, n_batches)
|
+ value.detach()
|
||||||
postfix = {
|
)
|
||||||
"loss": f"{float(loss.detach().cpu()):.4f}",
|
if rank == 0 and (batch_idx + 1) % progress_interval == 0:
|
||||||
"avg": f"{float(avg.detach().cpu()):.4f}",
|
progress.set_postfix(
|
||||||
"skipped": skipped,
|
loss=f"{loss.detach().item():.4f}",
|
||||||
}
|
avg=f"{(totals[0] / totals[1].clamp_min(1)).item():.4f}",
|
||||||
for name, value in parts_sum.items():
|
skipped=int(totals[2].item()),
|
||||||
postfix[name] = f"{float((value / max(1, n_batches)).detach().cpu()):.4f}"
|
)
|
||||||
progress.set_postfix(postfix)
|
|
||||||
except RuntimeError as exc:
|
|
||||||
if "Loss is not finite" not in str(exc):
|
|
||||||
raise
|
|
||||||
skipped += 1
|
|
||||||
logger.warning(f"Batch {batch_idx} skipped: {str(exc)[:120]}")
|
|
||||||
|
|
||||||
|
if dist.is_initialized():
|
||||||
|
dist.all_reduce(totals, op=dist.ReduceOp.SUM)
|
||||||
|
skipped = int(totals[2].item())
|
||||||
if skipped:
|
if skipped:
|
||||||
logger.info(f"Skipped {skipped} batches due to non-finite loss")
|
logger.info(f"Skipped {skipped} rank-batches due to non-finite loss")
|
||||||
return float((total / max(1, n_batches)).detach().cpu()) if n_batches else float("inf")
|
if totals[1].item() == 0:
|
||||||
|
return float("inf")
|
||||||
|
return float((totals[0] / totals[1]).item())
|
||||||
|
|
||||||
|
|
||||||
def build_metadata(
|
def build_metadata(
|
||||||
@@ -499,6 +639,7 @@ def build_metadata(
|
|||||||
"exposure_locality_buffer_size": int(args.exposure_locality_buffer_size),
|
"exposure_locality_buffer_size": int(args.exposure_locality_buffer_size),
|
||||||
"data_parallel": bool(args.data_parallel),
|
"data_parallel": bool(args.data_parallel),
|
||||||
"gpu_ids": args.gpu_ids,
|
"gpu_ids": args.gpu_ids,
|
||||||
|
"ddp_world_size": int(os.environ.get("WORLD_SIZE", "1")),
|
||||||
"split_sizes": {
|
"split_sizes": {
|
||||||
"train": int(len(train_subset)),
|
"train": int(len(train_subset)),
|
||||||
"val": int(len(val_subset)),
|
"val": int(len(val_subset)),
|
||||||
@@ -511,19 +652,12 @@ def build_metadata(
|
|||||||
|
|
||||||
def main() -> None:
|
def main() -> None:
|
||||||
args = parse_args()
|
args = parse_args()
|
||||||
set_seed(args.seed)
|
device, rank, local_rank, world_size = init_distributed(args)
|
||||||
device = resolve_device(args.device)
|
set_seed(args.seed + rank)
|
||||||
configure_torch_for_training(device)
|
configure_torch_for_training(device)
|
||||||
|
|
||||||
run_dir, run_name = create_unique_run_dir(
|
run_dir, run_name = distributed_run_dir(args, rank, world_size)
|
||||||
lambda timestamp: (
|
logger = rank_logger(rank, run_dir)
|
||||||
f"absolute_exponential_next_token_{args.target_mode}_"
|
|
||||||
f"gap_{args.no_event_interval_years:g}y_"
|
|
||||||
f"{'exposure' if args.exposure_cache_dir else 'noexposure'}_"
|
|
||||||
f"{timestamp}"
|
|
||||||
)
|
|
||||||
)
|
|
||||||
logger = setup_logging(run_dir)
|
|
||||||
|
|
||||||
logger.info(f"Starting next-step training run: {run_name}")
|
logger.info(f"Starting next-step training run: {run_name}")
|
||||||
logger.info(f"Device: {device}")
|
logger.info(f"Device: {device}")
|
||||||
@@ -571,6 +705,12 @@ def main() -> None:
|
|||||||
f"Samples: train={len(train_subset)}, val={len(val_subset)}, test={len(test_subset)}"
|
f"Samples: train={len(train_subset)}, val={len(val_subset)}, test={len(test_subset)}"
|
||||||
)
|
)
|
||||||
|
|
||||||
|
if args.batch_size % world_size != 0:
|
||||||
|
raise ValueError(
|
||||||
|
f"--batch_size={args.batch_size} must be divisible by "
|
||||||
|
f"DDP world size {world_size}"
|
||||||
|
)
|
||||||
|
local_batch_size = args.batch_size // world_size
|
||||||
dataloader_kwargs = {
|
dataloader_kwargs = {
|
||||||
"collate_fn": collate_fn,
|
"collate_fn": collate_fn,
|
||||||
"num_workers": args.num_workers,
|
"num_workers": args.num_workers,
|
||||||
@@ -584,42 +724,90 @@ def main() -> None:
|
|||||||
)
|
)
|
||||||
if use_locality_sampler:
|
if use_locality_sampler:
|
||||||
logger.info("Using exposure-locality batch sampler for training")
|
logger.info("Using exposure-locality batch sampler for training")
|
||||||
train_loader = DataLoader(
|
if world_size > 1:
|
||||||
|
train_batch_sampler = DistributedExposureLocalityBatchSampler(
|
||||||
train_subset,
|
train_subset,
|
||||||
batch_sampler=ExposureLocalityBatchSampler(
|
batch_size=local_batch_size,
|
||||||
train_subset,
|
|
||||||
batch_size=args.batch_size,
|
|
||||||
buffer_size=args.exposure_locality_buffer_size,
|
buffer_size=args.exposure_locality_buffer_size,
|
||||||
seed=args.seed,
|
seed=args.seed,
|
||||||
),
|
rank=rank,
|
||||||
|
world_size=world_size,
|
||||||
|
)
|
||||||
|
else:
|
||||||
|
train_batch_sampler = ExposureLocalityBatchSampler(
|
||||||
|
train_subset,
|
||||||
|
batch_size=local_batch_size,
|
||||||
|
buffer_size=args.exposure_locality_buffer_size,
|
||||||
|
seed=args.seed,
|
||||||
|
)
|
||||||
|
train_loader = DataLoader(
|
||||||
|
train_subset,
|
||||||
|
batch_sampler=train_batch_sampler,
|
||||||
**dataloader_kwargs,
|
**dataloader_kwargs,
|
||||||
)
|
)
|
||||||
else:
|
else:
|
||||||
train_loader = DataLoader(
|
train_sampler = (
|
||||||
|
DistributedSampler(
|
||||||
train_subset,
|
train_subset,
|
||||||
batch_size=args.batch_size,
|
num_replicas=world_size,
|
||||||
sampler=RandomSampler(
|
rank=rank,
|
||||||
|
shuffle=True,
|
||||||
|
seed=args.seed,
|
||||||
|
)
|
||||||
|
if world_size > 1
|
||||||
|
else RandomSampler(
|
||||||
train_subset,
|
train_subset,
|
||||||
generator=torch.Generator().manual_seed(args.seed),
|
generator=torch.Generator().manual_seed(args.seed),
|
||||||
),
|
)
|
||||||
|
)
|
||||||
|
train_loader = DataLoader(
|
||||||
|
train_subset,
|
||||||
|
batch_size=local_batch_size,
|
||||||
|
sampler=train_sampler,
|
||||||
**dataloader_kwargs,
|
**dataloader_kwargs,
|
||||||
)
|
)
|
||||||
|
val_sampler = (
|
||||||
|
DistributedSampler(
|
||||||
|
val_subset, num_replicas=world_size, rank=rank, shuffle=False
|
||||||
|
)
|
||||||
|
if world_size > 1 else None
|
||||||
|
)
|
||||||
|
test_sampler = (
|
||||||
|
DistributedSampler(
|
||||||
|
test_subset, num_replicas=world_size, rank=rank, shuffle=False
|
||||||
|
)
|
||||||
|
if world_size > 1 else None
|
||||||
|
)
|
||||||
val_loader = DataLoader(
|
val_loader = DataLoader(
|
||||||
val_subset,
|
val_subset,
|
||||||
batch_size=args.batch_size,
|
batch_size=local_batch_size,
|
||||||
|
sampler=val_sampler,
|
||||||
shuffle=False,
|
shuffle=False,
|
||||||
**dataloader_kwargs,
|
**dataloader_kwargs,
|
||||||
)
|
)
|
||||||
test_loader = DataLoader(
|
test_loader = DataLoader(
|
||||||
test_subset,
|
test_subset,
|
||||||
batch_size=args.batch_size,
|
batch_size=local_batch_size,
|
||||||
|
sampler=test_sampler,
|
||||||
shuffle=False,
|
shuffle=False,
|
||||||
**dataloader_kwargs,
|
**dataloader_kwargs,
|
||||||
)
|
)
|
||||||
|
|
||||||
model = build_model(args, dataset).to(device)
|
backbone = build_model(args, dataset)
|
||||||
model = maybe_wrap_data_parallel(model, args, device, logger)
|
|
||||||
readout = build_next_step_readout(args).to(device)
|
readout = build_next_step_readout(args).to(device)
|
||||||
|
model = NextStepTrainingModel(
|
||||||
|
backbone, readout, args.readout_name
|
||||||
|
).to(device)
|
||||||
|
if world_size > 1:
|
||||||
|
model = DistributedDataParallel(
|
||||||
|
model, device_ids=[local_rank], output_device=local_rank
|
||||||
|
)
|
||||||
|
logger.info(
|
||||||
|
f"Using DDP with {world_size} processes; "
|
||||||
|
f"global_batch={args.batch_size}, per_gpu_batch={local_batch_size}"
|
||||||
|
)
|
||||||
|
else:
|
||||||
|
model = maybe_wrap_data_parallel(model, args, device, logger)
|
||||||
criterion = build_next_step_loss(args)
|
criterion = build_next_step_loss(args)
|
||||||
optimizer = AdamW(
|
optimizer = AdamW(
|
||||||
model.parameters(),
|
model.parameters(),
|
||||||
@@ -627,12 +815,17 @@ def main() -> None:
|
|||||||
betas=tuple(args.betas),
|
betas=tuple(args.betas),
|
||||||
weight_decay=args.weight_decay,
|
weight_decay=args.weight_decay,
|
||||||
)
|
)
|
||||||
|
amp_enabled = bool(args.amp and device.type == "cuda")
|
||||||
|
scaler = torch.amp.GradScaler("cuda", enabled=amp_enabled)
|
||||||
adaptive_lr = args.base_lr * math.sqrt(args.batch_size / 128)
|
adaptive_lr = args.base_lr * math.sqrt(args.batch_size / 128)
|
||||||
|
|
||||||
|
if rank == 0:
|
||||||
save_config(
|
save_config(
|
||||||
args,
|
args,
|
||||||
run_dir / "train_config.json",
|
run_dir / "train_config.json",
|
||||||
extra=build_metadata(args, dataset, run_name, train_subset, val_subset, test_subset),
|
extra=build_metadata(
|
||||||
|
args, dataset, run_name, train_subset, val_subset, test_subset
|
||||||
|
),
|
||||||
)
|
)
|
||||||
|
|
||||||
best_val = float("inf")
|
best_val = float("inf")
|
||||||
@@ -642,18 +835,29 @@ def main() -> None:
|
|||||||
start = time.time()
|
start = time.time()
|
||||||
|
|
||||||
for epoch in range(args.max_epochs):
|
for epoch in range(args.max_epochs):
|
||||||
|
if hasattr(train_loader.batch_sampler, "set_epoch"):
|
||||||
|
train_loader.batch_sampler.set_epoch(epoch)
|
||||||
|
elif hasattr(train_loader.sampler, "set_epoch"):
|
||||||
|
train_loader.sampler.set_epoch(epoch)
|
||||||
lr = get_lr(epoch, args, adaptive_lr)
|
lr = get_lr(epoch, args, adaptive_lr)
|
||||||
set_optimizer_lr(optimizer, lr)
|
set_optimizer_lr(optimizer, lr)
|
||||||
|
|
||||||
train_loss = run_epoch(logger, args, model, readout, criterion, train_loader, optimizer, device, True)
|
train_loss = run_epoch(
|
||||||
|
logger, args, model, criterion, train_loader, optimizer,
|
||||||
|
device, True, rank, scaler, amp_enabled,
|
||||||
|
)
|
||||||
with torch.no_grad():
|
with torch.no_grad():
|
||||||
val_loss = run_epoch(logger, args, model, readout, criterion, val_loader, None, device, False)
|
val_loss = run_epoch(
|
||||||
|
logger, args, model, criterion, val_loader, None,
|
||||||
|
device, False, rank, scaler, amp_enabled,
|
||||||
|
)
|
||||||
|
|
||||||
is_best = val_loss < best_val
|
is_best = val_loss < best_val
|
||||||
if is_best:
|
if is_best:
|
||||||
best_val = val_loss
|
best_val = val_loss
|
||||||
patience = 0
|
patience = 0
|
||||||
save_checkpoint(unwrap_model(model), best_model_path)
|
if rank == 0:
|
||||||
|
save_checkpoint(unwrap_model(model).model, best_model_path)
|
||||||
else:
|
else:
|
||||||
patience += 1
|
patience += 1
|
||||||
|
|
||||||
@@ -675,15 +879,25 @@ def main() -> None:
|
|||||||
logger.info(f"Early stopping triggered at epoch {epoch + 1}")
|
logger.info(f"Early stopping triggered at epoch {epoch + 1}")
|
||||||
break
|
break
|
||||||
|
|
||||||
|
if rank == 0:
|
||||||
with (run_dir / "history.json").open("w", encoding="utf-8") as f:
|
with (run_dir / "history.json").open("w", encoding="utf-8") as f:
|
||||||
json.dump(history, f, indent=2)
|
json.dump(history, f, indent=2)
|
||||||
|
|
||||||
logger.info("Evaluating best model on next-step test split...")
|
logger.info("Evaluating best model on next-step test split...")
|
||||||
unwrap_model(model).load_state_dict(torch.load(best_model_path, map_location=device))
|
if world_size > 1:
|
||||||
|
dist.barrier()
|
||||||
|
unwrap_model(model).model.load_state_dict(
|
||||||
|
torch.load(best_model_path, map_location=device)
|
||||||
|
)
|
||||||
with torch.no_grad():
|
with torch.no_grad():
|
||||||
test_loss = run_epoch(logger, args, model, readout, criterion, test_loader, None, device, False)
|
test_loss = run_epoch(
|
||||||
|
logger, args, model, criterion, test_loader, None,
|
||||||
|
device, False, rank, scaler, amp_enabled,
|
||||||
|
)
|
||||||
logger.info(f"Test loss: {test_loss:.6f}")
|
logger.info(f"Test loss: {test_loss:.6f}")
|
||||||
logger.info(f"Best checkpoint: {best_model_path}")
|
logger.info(f"Best checkpoint: {best_model_path}")
|
||||||
|
if dist.is_initialized():
|
||||||
|
dist.destroy_process_group()
|
||||||
|
|
||||||
|
|
||||||
if __name__ == "__main__":
|
if __name__ == "__main__":
|
||||||
|
|||||||
Reference in New Issue
Block a user