Add arbitrary fixed-effect contrasts

2026-08-13 13:39:33 +08:00
parent 8557daecac
commit 48ab77f9ab
8 changed files with 515 additions and 29 deletions
--- a/include/spectra_reml/batch_io.hpp
+++ b/include/spectra_reml/batch_io.hpp
@@ -20,6 +20,8 @@ struct BatchInputPaths {
    std::filesystem::path tasks_tsv;
    std::filesystem::path extra_offsets_i64;
    std::filesystem::path extra_indices_i32;
+    std::filesystem::path contrast_matrix_f64;
+    std::filesystem::path contrast_metadata_tsv;
    std::filesystem::path output_directory;
 };

@@ -28,6 +30,7 @@ struct BatchDimensions {
    std::size_t base_covariate_count = 0;
    std::size_t phenotype_row_count = 0;
    std::size_t extra_covariate_row_count = 0;
+    std::size_t contrast_count = 0;
 };

 struct BatchOptions {