Handle boundary and line-search fixed-effect inference
This commit is contained in:
10
README.md
10
README.md
@@ -151,14 +151,20 @@ Optional named contrasts are supplied by `--contrast-matrix`,
|
||||
task-specific covariate columns receive zero weights automatically. Finalized
|
||||
results contain contrast estimates, adjusted standard errors, statistics,
|
||||
numerator and denominator degrees of freedom, and p-values as JSON arrays.
|
||||
This release uses manifest v2, run-signature v2, block v3, and finalized-output
|
||||
v2 contracts. It intentionally does not read older contracts.
|
||||
This release uses manifest v2, run-signature v3, block v4, and finalized-output
|
||||
v3 contracts. It intentionally does not read older block, run-signature, or
|
||||
finalized-output contracts.
|
||||
|
||||
Fixed-effect inference defaults to Satterthwaite. Select Kenward-Roger or turn
|
||||
inference off with `--fixed-effect-test kenward-roger` or
|
||||
`--fixed-effect-test none`. Coefficient-wise standard errors, statistics,
|
||||
denominator degrees of freedom, and p-values are exported as JSON arrays; tasks
|
||||
with extra covariates also report their joint F test in the summary columns.
|
||||
An accepted `sigma_g2=0` boundary is refitted as ordinary least squares without
|
||||
the GRM term and is reported as `boundary_ols`. A retained
|
||||
`line_search_failed` iterate continues through the selected fixed-effect
|
||||
inference and is reported as `line_search_conditional` while preserving the
|
||||
optimizer status.
|
||||
|
||||
## Recovery and provenance
|
||||
|
||||
|
||||
Reference in New Issue
Block a user