Commit Graph

86 Commits

Author SHA1 Message Date
d27eca3f3d Add individual Weibull parameter exporter 2026-08-05 11:02:35 +08:00
f1ca401783 feat: force recompute AUC batch evaluations 2026-08-03 14:02:09 +08:00
e040707d07 fix: evaluate AUC on fixed test EIDs 2026-08-03 13:56:06 +08:00
271a678e73 Fix calibration death token lookup 2026-08-03 08:33:21 +08:00
4f102fb271 Add complete experiment rerun workflow 2026-08-01 14:35:39 +08:00
de6f9b75b9 Remove legacy event and mixed distribution paths 2026-08-01 14:23:18 +08:00
dfb22adf2d Add train-split robust scaling for continuous values 2026-08-01 11:37:21 +08:00
89dcf4b362 Train assessment smoking and alcohol model 2026-07-31 13:14:35 +08:00
efd18f1be2 Add assessment and all extra-info experiments 2026-07-31 11:12:11 +08:00
4580058687 Optimize calibration evaluation 2026-07-30 18:29:15 +08:00
e471de030d Add all-future calibration evaluation 2026-07-30 17:21:57 +08:00
c622ec50f7 Add disease history ablation modes 2026-07-29 13:53:15 +08:00
31f129a7dc Add recursive AUC evaluation script 2026-07-27 12:54:02 +08:00
059c756686 Add key-model multiseed training script 2026-07-27 10:38:11 +08:00
e016ac501c feat: add multi-GPU batch training matrix 2026-07-25 14:53:31 +08:00
315f552301 refactor: isolate Delphi2M next-token pipeline 2026-07-25 14:22:36 +08:00
15ace878f4 Remove obsolete evaluation and batch scripts 2026-07-25 13:14:42 +08:00
b13db5e407 Unify FFN and TrajMixer model architectures 2026-07-25 12:59:09 +08:00
4526191fe1 Report AUCs in Delphi2M format 2026-07-25 11:18:24 +08:00
3af823f2e1 Fix RBF time-bias initialization 2026-07-24 14:43:59 +08:00
f6bde7e167 Add t-query logits and hidden export script 2026-07-08 17:29:25 +08:00
0ff0b6d861 Add script to compute landmark future death and incident disease risks 2026-07-01 17:45:17 +08:00
bf31aa0432 Avoid multiprocessing data loader for shape export 2026-07-01 15:37:36 +08:00
d08e5b34f4 Add Weibull shape export scripts 2026-07-01 15:31:31 +08:00
f417a91a74 Parallelize extra-info summary reduction 2026-07-01 13:21:08 +08:00
e3c9ecd19f Batch extra-info disease attribution stats 2026-07-01 12:47:30 +08:00
d3e68ac09b Avoid overflow in attribution variance 2026-07-01 10:58:09 +08:00
16df74c04d Skip attribution for next-token runs 2026-07-01 10:47:09 +08:00
d9dc115e09 Report disease parameter attribution 2026-07-01 10:16:51 +08:00
3cf756ccb0 Add landmark attribution dependencies 2026-07-01 09:55:38 +08:00
93450ab06b Update missing evaluation runner 2026-07-01 09:19:42 +08:00
84ae07bf48 Add missing training runs script 2026-06-29 15:40:55 +08:00
ca294193f4 Clarify empty extra-info logging 2026-06-29 11:26:48 +08:00
d4a29063d6 Add no extra-info type list 2026-06-29 11:14:50 +08:00
00ccedf82f Report death distribution parameters for disease attribution 2026-06-29 10:42:32 +08:00
fe826c4052 Defer attribution output until after GPU pass 2026-06-27 16:11:49 +08:00
980dd7c282 Align disease attribution batching with survival evaluator 2026-06-27 16:01:35 +08:00
517d573d3b Reduce attribution GPU synchronization 2026-06-27 15:56:12 +08:00
20686c128f Vectorize per-disease attribution batches 2026-06-27 15:51:12 +08:00
8928688aca Optimize per-disease attribution scanning 2026-06-27 15:43:27 +08:00
8ef88ff325 Pad attribution batches before concatenation 2026-06-27 15:38:32 +08:00
a7e969ae51 Summarize disease mortality attribution by age and sex 2026-06-27 15:33:50 +08:00
34353d33d5 Scan all diseases for mortality attribution 2026-06-27 15:30:38 +08:00
128a8ce655 Add single-disease mortality attribution script 2026-06-27 15:24:15 +08:00
01629cec56 Fix mortality attribution active rows 2026-06-27 14:29:32 +08:00
2ae92da0ec Stream mortality attribution batches 2026-06-27 14:08:02 +08:00
12265bd248 Batch mortality attribution queries 2026-06-27 13:57:16 +08:00
0b7c866292 Add mortality attribution evaluation 2026-06-27 13:34:30 +08:00
00de2ff4a9 Fix event-free survival inference tensor use 2026-06-27 12:08:19 +08:00
307704f74d Simplify event-free survival data loading 2026-06-27 12:02:48 +08:00